Basic Information
Locus ID:
CH04.2198
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34722038 | 34726955 | + | CH04.2198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 81,464.65 Da | 67.76 | 63.92 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 315 | 363 | 6.69823E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 386 | 450 | 3.0E-9 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 315 | 359 | 5.4E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 386 | 457 | 1.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 398 | 5.16E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 464 | 526 | 3.18E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 396 | 1.1E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 446 | 713 | 2.6E-55 | - |
| SMART | SM00647 | ibrneu5 | 454 | 523 | 0.12 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 385 | 450 | 4.3E-10 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 311 | 527 | 38.665985 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 364 | 10.055033 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 641 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.3 | - | 1.36E-139 |
| RefSeq | XP_004986367.1 | probable E3 ubiquitin-protein ligase ARI2 [Setaria italica] | 2.79E-248 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 5.51E-138 | |
| TrEMBL | A0A368SHI1 | RBR-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=SETIT_9G165100v2 PE=3 SV=1 | 6.32E-247 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1188, AH01.1189, CH01.1458, CH01.1459, CH04.2197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225740, gene-QOZ80_3AG0225750 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341310.1, HORVU.MOREX.r3.4HG0341330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062996, gene-QYE76_062997 |
| Poaceae | Oryza coarctata | 3 | Oco05G017350, Oco05G018400, Oco05G018410 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g42760.1, LOC_Os03g42780.1, LOC_Os03g42790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150500, gene-BS78_01G150600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104418, Pt_Chr0104419 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G009910 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115400, Tel4E01G115800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038370, gene_TRIDC4BG011020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G243200.1, TraesCS4B02G071700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218920_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20372, nbis-gene-20381, nbis-gene-39694 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3254, Zma_g922 |