Basic Information
Locus ID:
CH04.2195
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34668128 | 34674998 | + | CH04.2195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 58,729.63 Da | 61.16 | 80.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 140 | 197 | 2.3E-11 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 282 | 352 | 1.3E-26 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 206 | 272 | 1.3E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 200 | 273 | 1.31E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 276 | 351 | 2.3E-26 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 138 | 200 | 5.8E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 198 | 276 | 5.0E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 138 | 197 | 1.2E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 277 | 367 | 2.7E-33 | - |
| SMART | SM00213 | ubq_7 | 138 | 200 | 2.9E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 280 | 351 | 6.2E-28 | IPR000626 |
| SMART | SM00213 | ubq_7 | 201 | 273 | 5.5E-16 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 280 | 350 | 22.221004 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 206 | 272 | 16.864256 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 138 | 197 | 12.879359 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 332 | 353 | 9.5E-22 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 290 | 310 | 9.5E-22 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 311 | 331 | 9.5E-22 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 413 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.03E-69 |
| RefSeq | XP_039841172.1 | polyubiquitin-like [Panicum virgatum] | 2.98E-100 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 9.94E-69 | |
| TrEMBL | A0A8T0XSD7 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_1KG351700 PE=4 SV=1 | 6.74E-99 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||