Basic Information
Locus ID:
CH04.2170
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34338961 | 34341647 | + | CH04.2170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 35,262.34 Da | 46.11 | 81.66 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 144 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 55 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 274 | 0.0032 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 308 | 2.98E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 243 | 314 | 1.1E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 242 | 3.6E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 277 | 314 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 230 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 16 | 55 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 144 | 2.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 277 | 9.203785 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 112 | 146 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 146 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 23 | 64 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 261 | 275 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 131 | 145 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 42 | 56 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 261 | 275 | 5.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14530.1 | Transducin/WD40 repeat-like superfamily protein. | 2.16E-184 |
| RefSeq | XP_004961346.1 | protein ANTHESIS POMOTING FACTOR 1 [Setaria italica] | 6.39E-233 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 2.07E-183 | |
| TrEMBL | K3Z816 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101757146 PE=3 SV=1 | 1.44E-231 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17204 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11361, gene_24102 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007045, Ah026871 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130730 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13682, Sbi_jg52220, Sbi_jg533 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4111, Seu_jg9624 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017649, GOSA_00027662 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21084, Sgl26439, Sgl33232, Sgl38620 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000572, gene:ENSEOMG00000003847 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0014020, CQ.Regalona.r1.6AG0020210 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022920, pistato.v30095400 |
| Apiaceae | Apium graveolens | 2 | Ag3G00865, Ag5G00551 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008650, COCNU_07G001530 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708156, gene-LOC103719890 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2967.V1.1, AsparagusV1_10.303.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G19139, Ftri18G12982 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G14530.1, AT5G66240.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004561m.g.v1.0, Thhalv10014091m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30450.v2.2, Sp6g29480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g000100.2N, BniB05g024030.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1869, Ceq06G0191 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1949, Cgl06G0208 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g04940, gene.Cymno11g00260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0509s00001.v1.0, Dusal.0724s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g02200, gene.Thate08g07400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6988 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.312, evm.TU.LG07.479, evm.TU.LG09.90 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00017869, Pov_00020427, Pov_00027853 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03735, Lb1G03753, Lb4G22456, Lb4G22458 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.1133, AH05.1561, BH04.1107, BH05.1711, CH04.1285 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0364650, gene-QOZ80_5BG0412600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0079810.1, HORVU.MOREX.r3.4HG0341890.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016240, gene-QYE76_063918 |
| Poaceae | Oryza coarctata | 4 | Oco04G024600, Oco10G015580, Oco13G011530, Oco14G012290 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g46570.1, LOC_Os07g40030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G362100, gene-BS78_09G220400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503837, Pt_Chr0503854 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G014940, Chr16G011850 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G593600, Tel4E01G121300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG053710, gene_TRIDC1BG061510 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G365700.1, TraesCS1B02G383300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb072520_P001, Zm00001eb294550_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43356 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18710, Zma_g28712 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.354, evm.TU.LG08.1480, evm.TU.LG22.372 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12300, gene.Posoc04g00720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.110, evm.TU.Scaffold_6_RagTag.129 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14943, nbisL1-mrna-264 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14314, nbisL1-mrna-20739 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-112, nbisL1-mrna-5904 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.91, evm.TU.utg000019l.1146 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006788, Maker00007986 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11883, nbisL1-mrna-6554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17468, nbisL1-mrna-2416 |
| Salicaceae | Populus euphratica | 4 | populus_peu01073, populus_peu11897, populus_peu14138 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616879, gene-LOC132621919 |
| Solanaceae | Solanum chilense | 2 | SOLCI001565300, SOLCI006301500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005219, gene-LOC107009002 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23263_chr05_+, gene_5676 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3582, TC02G2497 |
| Zosteraceae | Zostera marina | 2 | Zosma01g00820.v3.1, Zosma03g00660.v3.1 |