Basic Information
Locus ID:
CH04.2149
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Vacuolar sorting protein 39 domain 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34204494 | 34210118 | - | CH04.2149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.11 | 74,511.30 Da | 69.20 | 77.36 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 372 | 538 | 13.724142 | IPR000547 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 64 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22860.1 | Vacuolar sorting protein 39. | 2.92E-44 |
| RefSeq | XP_004960591.1 | transforming growth factor-beta receptor-associated protein 1 [Setaria italica] | 8.33E-80 |
| F4I312 | Vacuolar sorting protein 3 OS=Arabidopsis thaliana OX=3702 GN=VPS3 PE=1 SV=2 | 2.89E-43 | |
| TrEMBL | A0A4U6VCC4 | CNH domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G073500v2 PE=4 SV=1 | 3.74E-79 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37364 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11269 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015998 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25725, Sbi_jg9557 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19082 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026556 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44282, Sgl49043 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003562, gene:ENSEOMG00000011442 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010520, CQ.Regalona.r1.8BG0011610 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30107890 |
| Apiaceae | Apium graveolens | 1 | Ag7G01097 |
| Arecaceae | Cocos nucifera | 1 | scaffold002973G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715288 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1580.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G24837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006692m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g20340.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1446 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g13290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0289s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4665 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012954 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G25293, Lb4G25294, Lb4G25309 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.661, BH05.715, CH04.2149, CH05.822, CH07.578 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0408810, gene-QOZ80_5BG0457220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0002660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019572 |
| Poaceae | Oryza coarctata | 2 | Oco09G000180, Oco10G000240 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g01360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G005600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201126 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G014160, Chr01G014170, Chr01G014180, Chr01G029480 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G026300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1AG001220 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G012500.4, TraesCS1B02G017200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb267510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18425, nbis-gene-50650 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27519 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1513, evm.TU.LG22.405 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21600, gene.Posoc03g24770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.741, evm.TU.Scaffold_2_RagTag.1573 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-31694, nbisL1-mrna-3598, nbisL1-mrna-3659 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10315 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18961, nbisL1-mrna-5753 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.473 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006157, Maker00011309 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2798, nbisL1-mrna-2799, nbisL1-mrna-8331 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21839, nbisL1-mrna-854 |
| Salicaceae | Populus euphratica | 4 | populus_peu03782, populus_peu03783, populus_peu03784 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641266 |
| Solanaceae | Solanum chilense | 1 | SOLCI002320800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020474 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10424_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0542 |
| Zosteraceae | Zostera marina | 1 | Zosma06g08580.v3.1 |