Basic Information
Locus ID:
CH04.2131
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ras family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34101392 | 34106678 | + | CH04.2131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 56,378.52 Da | 45.01 | 86.49 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01862 | Rab7 | 279 | 439 | 5.24373E-109 | - |
| Pfam | PF00071 | Ras family | 286 | 433 | 8.6E-45 | IPR001806 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 286 | 439 | 1.46E-41 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 130 | 185 | 3.92E-5 | IPR036047 |
| Gene3D | G3DSA:3.40.50.300 | - | 279 | 450 | 5.5E-54 | IPR027417 |
| SMART | SM00174 | rho_sub_3 | 286 | 437 | 3.5E-9 | IPR001806 |
| SMART | SM00176 | ran_sub_2 | 276 | 487 | 6.0E-4 | - |
| SMART | SM00175 | rab_sub_5 | 284 | 437 | 1.9E-66 | - |
| SMART | SM00173 | ras_sub_4 | 280 | 437 | 5.9E-12 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 288 | 428 | 2.5E-16 | IPR005225 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 254 | 470 | 25.582411 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 245 | 502 | 12.897272 | IPR001806 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 221 | 434 | 8.83988 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22740.1 | RAB GTPase homolog G3B. GTP-binding protein Rab7 | 1.14E-86 |
| RefSeq | XP_004961378.1 | ras-related protein Rab7 [Setaria italica] | 3.04E-109 |
| Q43463 | Ras-related protein Rab7 OS=Glycine max OX=3847 PE=2 SV=1 | 1.9E-90 | |
| TrEMBL | A0A1E5WDV6 | Ras-related protein Rab7 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003393 PE=4 SV=1 | 1.62E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH05.1595, AH05.2825, AH09.1187, BH05.1751, CH04.2131 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0160850 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0616380.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco04G014900 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g18870.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301262, Pt_Chr0306832, Pt_Chr0306837, Pt_Chr0502826 |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G341300.1.cds1, TraesCS6B02G372700.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12384 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25684 |