Basic Information
Locus ID:
CH04.2118
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the mannose-6-phosphate isomerase type 1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 33872548 | 33902831 | + | CH04.2118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 148,664.31 Da | 46.90 | 81.13 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07011 | cupin_PMI_type_I_N | 57 | 357 | 1.63682E-111 | - |
| Pfam | PF01238 | Phosphomannose isomerase type I | 54 | 421 | 1.4E-105 | IPR001250 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 52 | 449 | 2.1E-114 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 58 | 339 | 2.1E-137 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 54 | 457 | 2.1E-137 | IPR014710 |
| Gene3D | G3DSA:1.10.441.10 | Phosphomannose Isomerase, domain 2 | 197 | 363 | 2.1E-137 | - |
| TIGRFAM | TIGR00218 | manA: mannose-6-phosphate isomerase, class I | 56 | 447 | 1.5E-76 | IPR001250 |
| ProSitePatterns | PS00966 | Phosphomannose isomerase type I signature 2. | 319 | 344 | - | IPR018050 |
| ProSitePatterns | PS00965 | Phosphomannose isomerase type I signature 1. | 173 | 181 | - | IPR018050 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 319 | 338 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 284 | 299 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 300 | 319 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 93 | 108 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 173 | 196 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 138 | 159 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 57 | 75 | 2.8E-72 | IPR016305 |
| PRINTS | PR00714 | Phosphomannose isomerase type I signature | 338 | 357 | 2.8E-72 | IPR016305 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1349 | 1372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1231 | 1257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1329 | 1372 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00051 (Fructose and mannose metabolism)
map00051 (Fructose and mannose metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67070.1 | Mannose-6-phosphate isomerase, type I. Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. | 1.24E-136 |
| RefSeq | XP_025826683.1 | mannose-6-phosphate isomerase 1-like [Panicum hallii] | 5.75E-256 |
| Q9FZH5 | Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=PMI2 PE=1 SV=1 | 1.19E-135 | |
| TrEMBL | A0A2S3IF90 | Mannose-6-phosphate isomerase OS=Panicum hallii OX=206008 GN=PAHAL_8G224200 PE=3 SV=1 | 1.3E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 53 | AH01.2876, AH01.32, AH02.628, AH03.1625, AH03.1818, AH06.974 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046977 |
| Poaceae | Oryza coarctata | 1 | Oco17G000100 |
| Poaceae | Paspalum vaginatum | 8 | gene-BS78_01G253900, gene-BS78_02G100600, gene-BS78_K215400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302147, Pt_Chr0601454 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G023520, Chr01G024930, Chr05G016830, Chr05G025730 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5044 |