Basic Information
Locus ID:
CH04.2086
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 33361298 | 33370184 | + | CH04.2086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 106,228.16 Da | 46.25 | 90.44 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06558 | crotonase-like | 19 | 203 | 1.31092E-49 | - |
| Pfam | PF13041 | PPR repeat family | 651 | 697 | 4.4E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 827 | 851 | 0.026 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 726 | 746 | 0.074 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 548 | 578 | 1.8E-4 | IPR002885 |
| Pfam | PF16113 | Enoyl-CoA hydratase/isomerase | 28 | 361 | 3.0E-121 | IPR045004 |
| Pfam | PF01535 | PPR repeat | 754 | 784 | 1.4E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 790 | 814 | 0.78 | IPR002885 |
| SUPERFAMILY | SSF52096 | ClpP/crotonase | 17 | 363 | 1.31E-57 | IPR029045 |
| Gene3D | G3DSA:3.90.226.10 | - | 14 | 375 | 1.6E-126 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 618 | 714 | 3.5E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 476 | 614 | 2.5E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 748 | 935 | 7.8E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 548 | 581 | 8.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 653 | 686 | 3.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 754 | 786 | 9.7E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 752 | 786 | 11.673842 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 546 | 580 | 11.290196 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 651 | 685 | 9.755614 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30660.1 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein. | 7.46E-156 |
| RefSeq | XP_025808683.1 | putative pentatricopeptide repeat-containing protein At1g68930 [Panicum hallii] | 0 |
| Q6NMB0 | Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g30660 PE=2 SV=1 | 7.16E-155 | |
| TrEMBL | A0A3L6STN4 | Pentatricopeptide repeat-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G13040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |