Basic Information
Locus ID:
CH04.2024
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 32327474 | 32328928 | + | CH04.2024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 42,226.15 Da | 60.61 | 77.08 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 297 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A8T0MKZ4 | RRM domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_9NG320919 PE=4 SV=1 | 2.3E-36 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 53 | AH01.2876, AH01.32, AH02.628, AH03.1625, AH03.1818, AH06.974 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046977 |
| Poaceae | Oryza coarctata | 1 | Oco17G000100 |
| Poaceae | Paspalum vaginatum | 8 | gene-BS78_01G253900, gene-BS78_02G100600, gene-BS78_K215400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302147, Pt_Chr0601454 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G023520, Chr01G024930, Chr05G016830, Chr05G025730 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5044 |