Basic Information
Locus ID:
CH04.2002
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 31972133 | 31972714 | + | CH04.2002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 20,615.98 Da | 103.09 | 59.84 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 139 | 184 | 2.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 190 | 5.89E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 190 | 2.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 183 | 7.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 184 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034569952.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 7.21E-28 |
| TrEMBL | A0A4U6TL95 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G174300v2 PE=4 SV=1 | 1.63E-26 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH04.2002.