Basic Information
Locus ID:
CH04.197
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 1582922 | 1591388 | - | CH04.197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 122,052.87 Da | 45.41 | 80.66 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 483 | 668 | 7.84057E-51 | - |
| CDD | cd10316 | RGL4_M | 370 | 471 | 1.01171E-28 | IPR029413 |
| CDD | cd10320 | RGL4_N | 43 | 329 | 5.69017E-72 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 481 | 667 | 9.1E-49 | IPR029411 |
| Pfam | PF11891 | Protein RETICULATA-related | 902 | 962 | 1.3E-17 | IPR021825 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 45 | 237 | 3.6E-70 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 394 | 464 | 5.2E-21 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 369 | 464 | 1.49E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 478 | 668 | 8.25E-39 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 478 | 668 | 6.9E-17 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 367 | 468 | 5.7E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 38 | 306 | 1.6E-12 | IPR014718 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 784 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 9.1E-233 |
| RefSeq | XP_025805461.1 | rhamnogalacturonate lyase B-like [Panicum hallii] | 0 |
| Q9FGP9 | Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1 | 4.75E-29 | |
| TrEMBL | A0A2T8KGR3 | Rhamnogalacturonan endolyase OS=Panicum hallii OX=206008 GN=PAHAL_3G017900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology