Basic Information
Locus ID:
CH04.1949
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 31538446 | 31558148 | - | CH04.1949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 130,676.90 Da | 44.05 | 77.10 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 6.15899E-165 | - |
| CDD | cd00121 | MATH | 55 | 171 | 1.97801E-35 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 2.2E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 2.7E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 60 | 180 | 8.0E-20 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1094 | 3.2E-56 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 185 | 1.1E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 550 | 1.2E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 1.8E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 800 | 5.8E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 1.2E-51 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 523 | 3.6E-90 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 3.9E-23 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 39.107819 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 40.689789 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 54 | - | - |
| Coils | Coil | Coil | 531 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034607286.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Setaria viridis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6TUC5 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_8G169700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology