Basic Information
Locus ID:
CH04.193
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 1557022 | 1561222 | - | CH04.193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 52,311.47 Da | 56.59 | 77.10 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 280 | 353 | 2.6E-4 | IPR024977 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 278 | 477 | 1.73E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 273 | 477 | 1.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 268 | 302 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 347 | 0.24 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 178 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56900.1 | Transducin/WD40 repeat-like superfamily protein. | 3.54E-108 |
| RefSeq | XP_034603050.1 | aladin-like [Setaria viridis] | 2.15E-182 |
| Q8GWR1 | Aladin OS=Arabidopsis thaliana OX=3702 GN=AAAS PE=1 SV=1 | 3.41E-107 | |
| TrEMBL | A0A3L6Q1C1 | ANAPC4_WD40 domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G00930 PE=4 SV=1 | 1.48E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33194 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19128 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022343, Ah022344 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58968, Sbi_jg63647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23237 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00012909, GOSA_00012912, GOSA_00012913 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02395, Sgl07545 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012296, gene:ENSEOMG00000029864 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023820, CQ.Regalona.r1.3BG0024720 |
| Apiaceae | Apium graveolens | 1 | Ag10G02170 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709036 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1442.V1.1, AsparagusV1_02.1443.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G10544 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005968m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g071510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0832 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0943 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0063s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g05240, gene.Thate08g18310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2672 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000139, Pov_00000142 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16010, Lb3G17383 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.168, BH04.183, BH05.119, CH04.193, CH05.183 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0673500, gene-QOZ80_9BG0697190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0462720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003408 |
| Poaceae | Oryza coarctata | 3 | Oco03G009740, Oco21G000380, Oco23G001170 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g03794.1, LOC_Os12g03540.1, LOC_Os12g03601.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G010000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0702957, Pt_Chr0703117, Pt_Chr0703123, Pt_Chr0703156 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021530, Chr05G021650, Chr06G023130, Chr16G008900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G247100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG023470, gene_TRIDC5BG024780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G138500.1, TraesCS5B02G138600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb405260_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40116, nbis-gene-52922 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17526, Zma_g17527, Zma_g25463 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2061, evm.TU.LG15.1077 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28280 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1572, evm.TU.Scaffold_8_RagTag.235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19897 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19380 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012134 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13174 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12262 |
| Salicaceae | Populus euphratica | 1 | populus_peu26334 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609166 |
| Solanaceae | Solanum chilense | 1 | SOLCI003159800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028912 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12400 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2050 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30045.v3.1 |