halophFGD

Basic Information

Locus ID: CH04.1894

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	30669886	30672322	-	CH04.1894

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.32	52,634.75 Da	47.25	85.71	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	206	283	8.7E-5	IPR013187
SUPERFAMILY	SSF81383	F-box domain	21	83	5.49E-6	IPR036047
Gene3D	G3DSA:2.40.70.10	Acid Proteases	348	424	8.1E-8	IPR021109

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_037451371.1	putative F-box protein At2g02030 isoform X1 [Triticum dicoccoides]	2.31E-108
TrEMBL	A0A835C7I0	FBA_3 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_022374 PE=4 SV=1	6.14E-154

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Phoenix dactylifera	1	gene-LOC103709993
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.187.V1.1
Poaceae	Echinochloa crus-galli	24	AH02.2990, AH07.122, AH07.134, AH09.801, BH01.2596, BH07.313 ... BH05.3914, BH05.3915, BH06.2751, BH07.2057, BH07.71, BH09.200, CH01.2792, CH02.1075, CH03.4547, CH03.4708, CH03.4731, CH03.4734, CH03.4757, CH03.4758, CH04.1894, CH05.2057, CH05.4128, CH05.4444
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1BG0057680, gene-QOZ80_2AG0105300 ... gene-QOZ80_2BG0152490, gene-QOZ80_3BG0286140, gene-QOZ80_3BG0297760, gene-QOZ80_4AG0320530, gene-QOZ80_4AG0320550, gene-QOZ80_4AG0322110, gene-QOZ80_4AG0322130, gene-QOZ80_4BG0348890, gene-QOZ80_4BG0351940, gene-QOZ80_4BG0351950, gene-QOZ80_6AG0536790
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.2HG0122350.1.CDS1 ... HORVU.MOREX.r3.2HG0132050.1.CDS1, HORVU.MOREX.r3.2HG0168030.1.CDS1, HORVU.MOREX.r3.2HG0168040.1.CDS1, HORVU.MOREX.r3.2HG0194150.1.CDS1, HORVU.MOREX.r3.2HG0194780.1.CDS1, HORVU.MOREX.r3.3HG0221170.1.CDS1, HORVU.MOREX.r3.5HG0530150.1.CDS1, HORVU.MOREX.r3.6HG0543810.1.CDS1, HORVU.MOREX.r3.7HG0637410.1.CDS1, HORVU.MOREX.r3.7HG0637430.1.CDS1
Poaceae	Lolium multiflorum	28	gene-QYE76_006812, gene-QYE76_018860, gene-QYE76_025880 ... gene-QYE76_026959, gene-QYE76_026965, gene-QYE76_036377, gene-QYE76_036382, gene-QYE76_037512, gene-QYE76_038561, gene-QYE76_039703, gene-QYE76_039705, gene-QYE76_043546, gene-QYE76_044498, gene-QYE76_048448, gene-QYE76_049122, gene-QYE76_049815, gene-QYE76_052134, gene-QYE76_057658, gene-QYE76_057659, gene-QYE76_057662, gene-QYE76_057663, gene-QYE76_057664, gene-QYE76_058817, gene-QYE76_058828, gene-QYE76_060553, gene-QYE76_061038, gene-QYE76_066315, gene-QYE76_071663
Poaceae	Oryza coarctata	12	Oco01G010480, Oco01G023330, Oco02G015220, Oco03G010080 ... Oco05G014210, Oco07G003900, Oco07G003910, Oco07G004650, Oco12G003190, Oco12G003280, Oco18G006330, Oco23G002440
Poaceae	Oryza sativa	18	LOC_Os01g45020.2, LOC_Os02g15680.1, LOC_Os02g27400.1 ... LOC_Os02g51580.1, LOC_Os03g25080.1, LOC_Os04g31530.1, LOC_Os04g31540.1, LOC_Os04g31570.1, LOC_Os06g07380.1, LOC_Os06g07450.1, LOC_Os06g07460.1, LOC_Os06g19670.1, LOC_Os08g29400.1, LOC_Os09g27520.1, LOC_Os09g27570.1, LOC_Os09g27660.3, LOC_Os10g24870.1, LOC_Os12g38090.1
Poaceae	Paspalum vaginatum	8	gene-BS78_03G214100, gene-BS78_03G214200 ... gene-BS78_04G106800, gene-BS78_06G017700, gene-BS78_06G065900, gene-BS78_09G211600, gene-BS78_10G223700, gene-BS78_10G275800
Poaceae	Puccinellia tenuiflora	23	Pt_Chr0100567, Pt_Chr0100612, Pt_Chr0101012, Pt_Chr0204969 ... Pt_Chr0204971, Pt_Chr0206814, Pt_Chr0305310, Pt_Chr0305585, Pt_Chr0305651, Pt_Chr0305654, Pt_Chr0401364, Pt_Chr0500386, Pt_Chr0500513, Pt_Chr0500567, Pt_Chr0501495, Pt_Chr0501772, Pt_Chr0501783, Pt_Chr0603263, Pt_Chr0605307, Pt_Chr0605309, Pt_Chr0703331, Pt_Chr0703332, Pt_Ctg00334
Poaceae	Sporobolus alterniflorus	10	Chr06G014710, Chr15G016750, Chr15G024360, Chr19G008640 ... Chr20G006730, Chr23G015000, Chr26G004820, Chr27G007850, Chr27G007860, Chr29G006440
Poaceae	Thinopyrum elongatum	11	Tel2E01G205100, Tel2E01G562900, Tel2E01G764100 ... Tel2E01G788800, Tel3E01G082500, Tel3E01G810100, Tel5E01G799100, Tel6E01G117000, Tel6E01G363400, Tel7E01G056400, Telscf40501G000100
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG061400, gene_TRIDC3AG074610 ... gene_TRIDC3BG030670, gene_TRIDC3BG030700, gene_TRIDC6BG030800, gene_TRIDC7AG078480
Poaceae	Triticum aestivum	43	TraesCS2A02G341300.1.cds1, TraesCS2B02G104500.1.cds1 ... TraesCS2B02G151400.1.cds1, TraesCS2B02G196900.1, TraesCS2B02G339000.1, TraesCS2B02G490300.1.cds1, TraesCS2D02G093200.1.cds1, TraesCS2D02G131500.1.cds1, TraesCS2D02G318900.1.cds1, TraesCS2D02G441600.1.cds1, TraesCS2D02G441700.1.cds1, TraesCS2D02G449800.1, TraesCS3A02G001000.1.cds1, TraesCS3A02G037400.1.cds1, TraesCS3A02G526900.1.cds1, TraesCS3B02G002100.1.cds1, TraesCS3B02G046300.1.cds1, TraesCS3B02G046400.1.cds1, TraesCS3B02G178900.1, TraesCS3B02G179000.1.cds1, TraesCS3B02G210700.1, TraesCS3B02G210800.1, TraesCS3D02G042200.1.cds1, TraesCS3D02G532600.1.cds1, TraesCS4A02G356900.1, TraesCS4A02G461900.1.cds1, TraesCS4B02G001400.1.cds1, TraesCS4B02G060900.1.cds1, TraesCS4B02G061700.1.cds1, TraesCS5A02G197600.1.cds1, TraesCS5A02G200300.1, TraesCS5B02G198900.1.cds1, TraesCS5B02G515700.1.cds1, TraesCS5D02G030900.1.cds1, TraesCS6B02G201900.1, TraesCS6B02G202100.1, TraesCS7A02G027600.1.cds1, TraesCS7A02G569200.1.cds1, TraesCS7B02G489400.1.cds1, TraesCS7D02G009500.1.cds1, TraesCSU02G055600.1.cds1, TraesCSU02G184600.1.cds1, TraesCSU02G184700.1.cds1