Basic Information
Locus ID:
CH04.1877
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 30369482 | 30371593 | + | CH04.1877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 72,252.64 Da | 48.14 | 89.02 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 208 | 252 | 4.72565E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 418 | 673 | 3.7E-27 | IPR001245 |
| Pfam | PF01476 | LysM domain | 210 | 253 | 3.5E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 208 | 253 | 4.32E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 362 | 674 | 8.82E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 372 | 454 | 4.9E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 687 | 1.7E-40 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 196 | 266 | 7.1E-10 | IPR036779 |
| SMART | SM00257 | LysM_2 | 209 | 253 | 0.0012 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 388 | 675 | 28.937258 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 208 | 252 | 11.255569 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 3.08E-80 |
| RefSeq | XP_025827048.1 | lysM domain receptor-like kinase 4 [Panicum hallii] | 4.91E-307 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 3.0E-79 | |
| TrEMBL | A0A3L6PJ55 | LysM domain receptor-like kinase 4 OS=Panicum miliaceum OX=4540 GN=C2845_PM18G09340 PE=4 SV=1 | 1.91E-307 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology