Basic Information
Locus ID:
CH04.1684
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 27801436 | 27802554 | + | CH04.1684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 39,365.69 Da | 66.34 | 75.38 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 318 | 359 | 1.66946E-10 | - |
| Pfam | PF13639 | Ring finger domain | 317 | 359 | 7.1E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 364 | 4.48E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 364 | 1.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 358 | 2.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 359 | 11.618851 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 88 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021317765.1 | uncharacterized protein LOC8064800 [Sorghum bicolor] | 9.51E-89 |
| TrEMBL | A0A3L6PKT5 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G08670 PE=4 SV=1 | 3.46E-124 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology