Basic Information
Locus ID:
CH04.1683
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 27793830 | 27795071 | + | CH04.1683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 44,960.09 Da | 60.79 | 73.78 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 360 | 403 | 4.8627E-10 | - |
| Pfam | PF13639 | Ring finger domain | 360 | 403 | 9.4E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 353 | 407 | 3.08E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 356 | 407 | 1.5E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 360 | 402 | 0.0029 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 360 | 403 | 11.264779 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 124 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 3.39E-113 |
| TrEMBL | K3ZM70 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G137900v2 PE=4 SV=1 | 2.83E-117 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||