Basic Information
Locus ID:
CH04.1677
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 27745238 | 27755061 | + | CH04.1677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 114,054.54 Da | 35.08 | 83.46 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 318 | 3.39042E-177 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1008 | 1.6E-12 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 820 | 2.9E-44 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 450 | 1.2E-22 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 354 | 1.8E-92 | IPR000602 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 359 | 458 | 1.18E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 357 | 1.0E-107 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 1011 | 8.16E-138 | IPR011013 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 322 | 5.4E-118 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1015 | 2.1E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 402 | 458 | 2.3E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 480 | 602 | 6.8E-29 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 603 | 868 | 3.1E-93 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 323 | 401 | 1.1E-31 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 359 | 433 | 4.0E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_025827081.1 | probable alpha-mannosidase At5g13980 [Panicum hallii] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IEG9 | Alpha-mannosidase OS=Panicum hallii OX=206008 GN=PAHAL_8G192700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology