Basic Information
Locus ID:
CH04.1644
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the Casparian strip membrane proteins (CASP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 27248797 | 27249441 | - | CH04.1644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.17 | 18,540.14 Da | 32.02 | 108.30 | 0.65 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039777047.1 | CASP-like protein 1U2 [Panicum virgatum] | 3.53E-78 |
| C5Y376 | CASP-like protein 1U2 OS=Sorghum bicolor OX=4558 GN=Sb05g019440 PE=2 SV=1 | 2.12E-70 | |
| TrEMBL | A0A8T0PPQ4 | CASP-like protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG265400 PE=3 SV=1 | 7.98E-77 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH04.1452, CH04.1644, CH04.1646 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_9AG0687300, gene-QOZ80_9AG0687310 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0085320.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061534 |
| Poaceae | Oryza coarctata | 2 | Oco22G010470, Oco22G010580 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g42970.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G132200, gene-BS78_05G154000 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204784, Pt_Ctg00236 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G627200, Tel7E01G992000 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G383800.1.cds1, TraesCS1B02G410400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb113200_P001, Zm00001eb170450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44288 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18036 |