Basic Information
Locus ID:
CH04.1624
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 26960299 | 26963211 | - | CH04.1624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 67,405.12 Da | 29.77 | 76.00 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 80 | 360 | 8.2E-46 | IPR000719 |
| Pfam | PF03018 | Dirigent-like protein | 418 | 517 | 1.2E-25 | IPR004265 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 535 | 600 | 5.76E-7 | IPR036404 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 364 | 1.52E-64 | IPR011009 |
| Gene3D | G3DSA:2.100.10.30 | - | 535 | 603 | 7.8E-8 | IPR036404 |
| Gene3D | G3DSA:2.40.480.10 | - | 393 | 520 | 5.8E-8 | IPR044859 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 70 | 153 | 3.6E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 171 | 380 | 2.5E-48 | - |
| SMART | SM00220 | serkin_6 | 79 | 369 | 1.4E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 79 | 369 | 36.329338 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 85 | 107 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 214 | 226 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49760.1 | Leucine-rich repeat protein kinase family protein. | 2.38E-41 |
| RefSeq | XP_039799898.1 | probable LRR receptor-like serine/threonine-protein kinase RKF3 [Panicum virgatum] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 2.36E-40 | |
| TrEMBL | A0A8T0VZE1 | Dirigent protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG076000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology