Basic Information
Locus ID:
CH04.1583
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 26137251 | 26141199 | - | CH04.1583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 62,578.08 Da | 51.55 | 94.14 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.8E-19 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 41 | 4.4E-19 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 44 | 3.92E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 72 | 431 | 3.14E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 419 | 523 | 3.14E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.9E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 573 | 6.4E-157 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 44.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 363 | 387 | 8.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 76.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 496 | 120.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.003 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 333 | 362 | 92.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 423 | 446 | 720.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 240.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 2.17E-236 |
| RefSeq | XP_039825053.1 | transport inhibitor response 1-like protein Os11g0515500 [Panicum virgatum] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 3.56E-280 | |
| TrEMBL | A0A3L6Q2N1 | Transport inhibitor response 1-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G10000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology