Basic Information
Locus ID:
CH04.1512
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
ARP2
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 24553071 | 24566243 | + | CH04.1512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 107,180.58 Da | 43.72 | 87.53 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 51 | 190 | 7.99708E-17 | - |
| Pfam | PF00069 | Protein kinase domain | 654 | 913 | 4.1E-47 | IPR000719 |
| Pfam | PF00022 | Actin | 3 | 378 | 3.2E-100 | IPR004000 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 3 | 154 | 2.69E-48 | IPR043129 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 570 | 621 | 1.05E-8 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 633 | 917 | 7.38E-71 | IPR011009 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 147 | 377 | 1.38E-69 | IPR043129 |
| Gene3D | G3DSA:2.90.10.10 | - | 555 | 621 | 4.6E-6 | IPR036426 |
| Gene3D | G3DSA:3.30.420.40 | - | 139 | 350 | 4.1E-136 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 723 | 929 | 9.2E-57 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 181 | 272 | 4.1E-136 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 622 | 722 | 6.1E-25 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 7 | 378 | 4.1E-136 | - |
| SMART | SM00220 | serkin_6 | 649 | 917 | 1.0E-31 | IPR000719 |
| SMART | SM00268 | actin_3 | 4 | 392 | 8.4E-193 | IPR004000 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 529 | 641 | 9.704147 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 649 | 921 | 37.036041 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 655 | 676 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 768 | 780 | - | IPR008271 |
| PRINTS | PR00190 | Actin signature | 237 | 253 | 6.8E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 116 | 129 | 6.8E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 141 | 160 | 6.8E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 62 | 84 | 6.8E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 25 | 34 | 6.8E-27 | IPR004000 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27000.1 | actin related protein 2. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined. | 2.12E-252 |
| RefSeq | XP_008653510.1 | actin-related protein 2 [Zea mays] | 2.24E-271 |
| A2YUL5 | Actin-related protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=ARP2 PE=3 SV=2 | 2.27E-268 | |
| TrEMBL | A0A835FSJ2 | Actin-related protein 2 OS=Digitaria exilis OX=1010633 GN=HU200_005527 PE=3 SV=1 | 3.58E-270 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17666 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026902 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13650, Sbi_jg52252 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9596 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00024798, GOSA_00025983 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33442, Sgl38809 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000584, gene:ENSEOMG00000003242 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020510, CQ.Regalona.r1.6BG0021590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025070 |
| Apiaceae | Apium graveolens | 1 | Ag7G01365 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698014 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1156.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G25176 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g067200.2N, BniB07g035720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0089 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6909 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.108 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15147 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1337, BH04.1331, CH04.1512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383050, gene-QOZ80_5BG0429920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067052 |
| Poaceae | Oryza coarctata | 2 | Oco15G007130, Oco16G006910 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G143900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102971 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G006690, Chr17G006090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G587900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG053130, gene_TRIDC3BG059770 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G369400.1, TraesCS3B02G401300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb331340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36466 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17953, Zma_g17976 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2318, evm.TU.LG17.1368 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.805 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5761 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12409 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008652 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14490, nbisL1-mrna-883 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1611, nbisL1-mrna-8466, nbisL1-mrna-8467 |
| Salicaceae | Populus euphratica | 1 | populus_peu01269 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621200 |
| Solanaceae | Solanum chilense | 1 | SOLCI000003300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011945 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21266_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1075 |
| Zosteraceae | Zostera marina | 3 | Zosma04g21700.v3.1, Zosma04g21730.v3.1, Zosma05g01330.v3.1 |