halophFGD

Basic Information

Locus ID: CH04.1487

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Aminotransferase class I and II

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	24156583	24160377	-	CH04.1487

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.84	69,546.69 Da	78.86	68.03	-0.59

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:1.10.287.1970	-	539	570	4.7E-15	-
Gene3D	G3DSA:3.90.1150.10	Aspartate Aminotransferase, domain 1	507	538	4.7E-15	IPR015422
MobiDBLite	mobidb-lite	consensus disorder prediction	613	644	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	127	149	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	165	183	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	59	77	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	116	183	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	90	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	367	393	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	23	50	-	-

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K00814 (alanine transaminase [EC:2.6.1.2])

Pathway:

ko00220 (Arginine biosynthesis) map00220 (Arginine biosynthesis) ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01210 (2-Oxocarboxylic acid metabolism) map01210 (2-Oxocarboxylic acid metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00171 (C4-dicarboxylic acid cycle, NAD - malic enzyme type)

Reaction:

R00258 (L-Alanine + 2-Oxoglutarate <=> Pyruvate + L-Glutamate)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G72330.2	alanine aminotransferase 2. Encodes for alanine aminotransferase ALAAT2.	1.28E-19
RefSeq	NP_001314697.1	Alanine aminotransferase 2 [Zea mays]	2.78E-24
Swiss-Prot	P34106	Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1	1.68E-24
TrEMBL	B4FG03	Alanine aminotransferase 2-like OS=Zea mays OX=4577 PE=2 SV=1	2.25E-25

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	1	COCNU_13G006030
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G0360
Casuarinaceae	Casuarina glauca	1	Cgl08G0318
Poaceae	Echinochloa crus-galli	6	BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... CH04.1487