Basic Information
Locus ID:
CH04.1442
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 23140039 | 23141233 | - | CH04.1442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.89 | 34,627.90 Da | 54.30 | 75.65 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 37 | 81 | 5.1E-6 | IPR001810 |
| Pfam | PF01753 | MYND finger | 275 | 316 | 4.5E-5 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 83 | 2.05E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 98 | 221 | 1.44E-11 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 276 | 320 | 7.5E-8 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 266 | 323 | 2.3E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 97 | 231 | 1.2E-13 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 35 | 83 | 1.4E-5 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 274 | 316 | 10.971794 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 1.62E-70 |
| RefSeq | XP_004979281.1 | F-box protein At1g67340 isoform X2 [Setaria italica] | 6.41E-129 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 1.57E-69 | |
| TrEMBL | K3ZJ47 | MYND-type domain-containing protein OS=Setaria italica OX=4555 GN=101780235 PE=4 SV=1 | 1.45E-127 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology