Basic Information
Locus ID:
CH04.1416
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cleavage site for pathogenic type III effector avirulence factor Avr
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 22413022 | 22416770 | - | CH04.1416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.53 | 17,496.14 Da | 65.10 | 40.25 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 89 | 124 | 2.1E-15 | IPR008700 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004979267.1 | uncharacterized protein LOC101774022 [Setaria italica] | 1.55E-84 |
| TrEMBL | A0A1E5UP11 | AvrRpt-cleavage domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024352 PE=4 SV=1 | 1.55E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1222, CH04.1416 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0680700 |
| Poaceae | Oryza coarctata | 3 | Oco21G005600, Oco21G005660, Oco22G006710 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g29210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G127800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G004820 |
| Poaceae | Zea mays | 1 | Zm00001eb169750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38581 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18814 |