Basic Information
Locus ID:
CH04.140
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 1127563 | 1128093 | - | CH04.140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 18,962.03 Da | 57.12 | 85.00 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 174 | 7.61E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 174 | 8.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 8.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.017182 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 7.55E-13 |
| RefSeq | XP_025827428.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 7.06E-28 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 7.35E-12 | |
| TrEMBL | A0A8T0U061 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3NG121933 PE=4 SV=1 | 4.53E-26 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||