Basic Information
Locus ID:
CH04.1368
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 21426277 | 21427706 | + | CH04.1368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 48,934.20 Da | 38.81 | 84.19 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 42 | 380 | 1.4E-57 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 281 | 351 | 4.06E-14 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 40 | 384 | 7.73E-52 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 58 | 379 | 3.2E-83 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 280 | 351 | 3.2E-83 | IPR029070 |
| SMART | SM00636 | 2g34 | 39 | 380 | 6.1E-69 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 39 | 397 | 53.034081 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 5.93E-63 |
| RefSeq | XP_004979247.1 | chitinase-3-like protein 1 [Setaria italica] | 3.69E-286 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 6.91E-70 | |
| TrEMBL | A0A1E5UN95 | Chitinase-3-like protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024628 PE=4 SV=1 | 6.67E-285 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology