Basic Information
Locus ID:
CH04.132
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 1060505 | 1062813 | - | CH04.132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 24,697.67 Da | 49.07 | 78.80 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01960 | nsLTP1 | 28 | 116 | 1.96509E-47 | - |
| Pfam | PF00234 | Protease inhibitor/seed storage/LTP family | 30 | 115 | 4.9E-9 | IPR016140 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 27 | 117 | 3.23E-27 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 27 | 117 | 4.4E-31 | IPR036312 |
| SMART | SM00499 | aai_6 | 30 | 115 | 1.6E-14 | IPR016140 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 71 | 86 | 1.0E-33 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 106 | 117 | 1.0E-33 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 29 | 45 | 1.0E-33 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 50 | 64 | 1.0E-33 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 88 | 105 | 1.0E-33 | IPR000528 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59320.1 | lipid transfer protein 3. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. | 4.28E-24 |
| RefSeq | NP_001297146.1 | non-specific lipid-transfer protein precursor [Zea mays] | 2.94E-51 |
| P19656 | Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1 | 1.9E-51 | |
| TrEMBL | A0A811RLF7 | Non-specific lipid-transfer protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS53924 PE=3 SV=1 | 2.52E-52 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology