Basic Information
Locus ID:
CH04.1271
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 17685814 | 17692788 | + | CH04.1271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 46,731.83 Da | 51.68 | 90.98 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 70 | 334 | 9.7E-115 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 334 | 390 | 6.54E-8 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 333 | 3.77E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 96 | 399 | 1.6E-104 | IPR027417 |
| SMART | SM00382 | AAA_5 | 120 | 294 | 1.0E-5 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 70 | 388 | 2.4E-129 | IPR013765 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 30 | 7.0 | - |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 98 | 257 | 40.413033 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 267 | 338 | 23.757631 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 279 | 287 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 276 | 304 | 2.9E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 228 | 257 | 2.9E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 309 | 338 | 2.9E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 156 | 185 | 2.9E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 362 | 379 | 2.9E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 190 | 219 | 2.9E-74 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 67 | 394 | 41.613503 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 429 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 3.01E-168 |
| RefSeq | XP_025827587.1 | uncharacterized protein LOC112902654 [Panicum hallii] | 6.47E-272 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 2.89E-167 | |
| TrEMBL | A0A2T7CM15 | DNA repair protein recA homolog 3, mitochondrial OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G084400 PE=3 SV=1 | 1.46E-270 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology