halophFGD

Basic Information

Locus ID: CH04.126

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: PPR repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	1022076	1026926	+	CH04.126

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.83	120,180.59 Da	40.70	88.32	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	432	480	2.2E-10	IPR002885
Pfam	PF01535	PPR repeat	539	568	0.38	IPR002885
Pfam	PF13041	PPR repeat family	294	343	6.7E-16	IPR002885
Pfam	PF13041	PPR repeat family	223	272	3.3E-9	IPR002885
Pfam	PF13041	PPR repeat family	640	689	7.9E-16	IPR002885
Pfam	PF13041	PPR repeat family	570	619	2.6E-16	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	671	847	9.3E-24	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	390	506	4.5E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	276	389	4.1E-33	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	507	670	1.5E-45	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	147	275	2.1E-20	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	297	330	2.7E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	539	571	7.4E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	469	502	1.3E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	263	296	8.3E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	573	607	2.7E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	643	677	2.6E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	332	366	1.2E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	611	642	9.2E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	678	711	3.5E-4	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	606	640	11.454616	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	641	675	12.802855	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	432	466	9.054091	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	260	294	11.805378	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	571	605	13.734567	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	330	364	13.339959	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	676	710	10.632519	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	295	329	12.463056	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	467	501	10.818861	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	189	223	9.45966	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	536	570	9.996763	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K01177 (beta-amylase [EC:3.2.1.2])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism)

Reaction:

R02112 (Starch <=> Dextrin + Maltose) R11262 (Maltodextrin + H2O <=> Maltose)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_004978525.1	pentatricopeptide repeat-containing protein At1g09900 [Setaria italica]	6.49E-272
TrEMBL	A0A4U6TDF2	Pentatricopeptide repeat-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G011800v2 PE=4 SV=1	7.84E-276

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg22385, Sbi_jg25863
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007598, GOSA_00020792
Amaranthaceae	Suaeda glauca	1	Sgl20234
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... gene:ENSEOMG00000014439, gene:ENSEOMG00000021206, gene:ENSEOMG00000032143, gene:ENSEOMG00000044692
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... CQ.Regalona.r1.6AG0001550
Asteraceae	Flaveria trinervia	16	Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... Ftri17G20434, Ftri18G10643, Ftri18G13665, Ftri3G02489, Ftri4G14462, Ftri5G10762, Ftri6G09660, Ftri7G32935, Ftri7G33047, Ftri8G20906, Ftri9G08243, Ftri9G31977
Poaceae	Echinochloa crus-galli	51	AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... AH02.4536, AH03.1525, AH03.2542, AH03.3965, AH04.1546, AH04.857, AH05.694, AH07.2325, AH07.2725, AH08.227, BH01.3744, BH01.442, BH01.4776, BH01.4855, BH02.3376, BH03.266, BH05.2619, BH06.1851, BH06.1999, BH06.2556, BH06.2850, BH07.2229, BH07.2676, BH07.4192, BH08.1004, BH09.493, CH01.2044, CH01.2149, CH01.2234, CH01.3240, CH01.3413, CH02.3232, CH03.2630, CH03.3774, CH04.126, CH04.165, CH04.1903, CH05.3093, CH05.4464, CH07.2011, CH07.2447, CH09.1936, CH09.2670, CH09.2864, CH09.627
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4BG0332600
Poaceae	Hordeum vulgare	36	HORVU.MOREX.r3.1HG0031420.1.CDS1 ... HORVU.MOREX.r3.1HG0083430.1.CDS1, HORVU.MOREX.r3.2HG0119660.1.CDS1, HORVU.MOREX.r3.2HG0157690.1.CDS1, HORVU.MOREX.r3.2HG0172390.1, HORVU.MOREX.r3.2HG0197280.1.CDS1, HORVU.MOREX.r3.3HG0277230.1.CDS1, HORVU.MOREX.r3.3HG0287370.1.CDS1, HORVU.MOREX.r3.4HG0361670.1.CDS1, HORVU.MOREX.r3.4HG0362580.1.CDS1, HORVU.MOREX.r3.4HG0389020.1.CDS1, HORVU.MOREX.r3.4HG0413260.1.CDS1, HORVU.MOREX.r3.5HG0429430.1.CDS1, HORVU.MOREX.r3.5HG0432680.1.CDS1, HORVU.MOREX.r3.5HG0455710.1.CDS1, HORVU.MOREX.r3.5HG0458740.1, HORVU.MOREX.r3.5HG0468170.1, HORVU.MOREX.r3.5HG0470180.1.CDS1, HORVU.MOREX.r3.5HG0470490.1.CDS1, HORVU.MOREX.r3.5HG0484160.1.CDS1, HORVU.MOREX.r3.6HG0539110.1.CDS1, HORVU.MOREX.r3.6HG0555430.1, HORVU.MOREX.r3.6HG0558830.1.CDS1, HORVU.MOREX.r3.6HG0585190.1.CDS1, HORVU.MOREX.r3.6HG0605780.1.CDS1, HORVU.MOREX.r3.6HG0608230.1.CDS1, HORVU.MOREX.r3.6HG0608930.1.CDS1, HORVU.MOREX.r3.6HG0609870.1.CDS1, HORVU.MOREX.r3.6HG0614030.1, HORVU.MOREX.r3.7HG0665290.1.CDS1, HORVU.MOREX.r3.7HG0675970.1.CDS1, HORVU.MOREX.r3.7HG0686270.1.CDS1, HORVU.MOREX.r3.7HG0690540.1.CDS1, HORVU.MOREX.r3.7HG0694470.1.CDS1, HORVU.MOREX.r3.7HG0706070.1.CDS1, HORVU.MOREX.r3.7HG0712050.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... gene-QYE76_031598, gene-QYE76_033915, gene-QYE76_036735, gene-QYE76_041797, gene-QYE76_049256, gene-QYE76_050316, gene-QYE76_054552, gene-QYE76_057534, gene-QYE76_063234, gene-QYE76_067297, gene-QYE76_068230
Poaceae	Oryza coarctata	1	Oco02G011730
Poaceae	Paspalum vaginatum	12	gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... gene-BS78_02G158400, gene-BS78_03G144500, gene-BS78_06G011500, gene-BS78_07G103100, gene-BS78_08G171400, gene-BS78_09G092300, gene-BS78_09G127100, gene-BS78_K094000, gene-BS78_K232400
Poaceae	Sporobolus alterniflorus	58	Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... Chr03G008690, Chr03G014360, Chr03G020670, Chr04G004920, Chr04G012320, Chr04G016020, Chr05G014850, Chr05G034680, Chr06G003600, Chr06G022090, Chr06G025580, Chr07G002900, Chr07G002910, Chr07G004700, Chr07G011230, Chr07G024870, Chr08G005710, Chr09G009570, Chr09G009580, Chr09G011790, Chr10G005280, Chr10G005290, Chr10G015210, Chr10G016380, Chr10G016940, Chr11G022120, Chr12G011970, Chr12G011980, Chr12G028930, Chr12G033610, Chr14G008010, Chr14G008620, Chr15G006070, Chr15G006080, Chr15G017130, Chr15G018500, Chr17G004410, Chr19G015230, Chr20G005550, Chr20G007320, Chr20G008180, Chr20G010600, Chr20G011050, Chr21G005620, Chr21G006060, Chr23G008510, Chr23G017330, Chr23G017340, Chr23G018540, Chr26G012240, Chr26G013860, Chr26G016800, Chr27G001090, Chr31G001510
Poaceae	Thinopyrum elongatum	6	Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... Tel6E01G071300, Tel6E01G071400, Tel7E01G484600
Poaceae	Triticum dicoccoides	1	gene_TRIDC7AG060430
Poaceae	Zoysia japonica	1	nbis-gene-4890
Solanaceae	Lycium barbarum	88	gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... gene-LOC132601573, gene-LOC132601684, gene-LOC132602294, gene-LOC132602375, gene-LOC132602429, gene-LOC132603304, gene-LOC132603305, gene-LOC132604055, gene-LOC132604455, gene-LOC132606488, gene-LOC132607687, gene-LOC132607709, gene-LOC132607761, gene-LOC132607768, gene-LOC132607917, gene-LOC132607943, gene-LOC132607992, gene-LOC132607993, gene-LOC132608100, gene-LOC132608378, gene-LOC132609516, gene-LOC132609560, gene-LOC132609609, gene-LOC132610374, gene-LOC132611779, gene-LOC132611785, gene-LOC132611807, gene-LOC132611832, gene-LOC132611837, gene-LOC132612053, gene-LOC132612165, gene-LOC132612201, gene-LOC132612646, gene-LOC132612968, gene-LOC132612997, gene-LOC132613026, gene-LOC132613111, gene-LOC132613125, gene-LOC132613148, gene-LOC132613217, gene-LOC132613435, gene-LOC132613816, gene-LOC132618126, gene-LOC132618148, gene-LOC132620134, gene-LOC132620753, gene-LOC132621465, gene-LOC132624192, gene-LOC132624359, gene-LOC132624397, gene-LOC132624406, gene-LOC132628580, gene-LOC132628589, gene-LOC132628681, gene-LOC132628733, gene-LOC132628864, gene-LOC132629048, gene-LOC132630311, gene-LOC132631151, gene-LOC132631279, gene-LOC132631539, gene-LOC132631704, gene-LOC132633629, gene-LOC132637024, gene-LOC132637083, gene-LOC132637342, gene-LOC132637683, gene-LOC132637737, gene-LOC132638126, gene-LOC132639158, gene-LOC132639500, gene-LOC132639506, gene-LOC132639599, gene-LOC132639606, gene-LOC132639741, gene-LOC132639932, gene-LOC132640665, gene-LOC132640975, gene-LOC132641207, gene-LOC132641299, gene-LOC132642290, gene-LOC132642335, gene-LOC132642451, gene-LOC132644299, gene-LOC132644396
Solanaceae	Solanum pennellii	1	gene-LOC107016424
Tamaricaceae	Reaumuria soongarica	22	MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... STRG.11171_chr05_-, STRG.14935_chr08_-, STRG.17875_chr09_+, STRG.2271_chr01_+, STRG.24870_chr08_+, STRG.26144_chr11_+, STRG.26385_chr11_+, STRG.26543_chr11_-, STRG.26574_chr11_+, STRG.28350_chr04_+, STRG.30337_chr10_-, STRG.31126_chr11_+, STRG.31648_chr11_+, STRG.32148_chr09_+, STRG.3814_chr02_-, STRG.4509_chr03_-, STRG.8526_chr06_+, STRG.8964_chr03_+, STRG.9014_chr03_-