Basic Information
Locus ID:
CH04.1081
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 13688719 | 13699627 | - | CH04.1081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 175,238.73 Da | 40.56 | 75.00 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1261 | 1436 | 6.34649E-72 | - |
| Pfam | PF00069 | Protein kinase domain | 40 | 278 | 8.5E-45 | IPR000719 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1279 | 1434 | 7.0E-15 | IPR000477 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 25 | 274 | 2.43E-62 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1219 | 1486 | 1.33E-80 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 1302 | 1436 | 3.7E-55 | IPR043128 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 12 | 112 | 1.9E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 132 | 310 | 1.5E-41 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1447 | 1488 | 6.7E-7 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1220 | 1361 | 3.7E-55 | - |
| SMART | SM00220 | serkin_6 | 40 | 430 | 6.4E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 40 | 406 | 34.74633 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 46 | 69 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
| Coils | Coil | Coil | 900 | 942 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 2.64E-43 |
| RefSeq | XP_039776595.1 | putative disease resistance protein RGA4 isoform X4 [Panicum virgatum] | 4.28E-124 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 5.02E-42 | |
| TrEMBL | A0A5B6U2U9 | Reverse transcriptase (RNA-dependent DNA polymerase) domain containing protein OS=Gossypium australe OX=47621 GN=EPI10_034373 PE=4 SV=1 | 6.85E-276 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||