Basic Information
Locus ID:
CH03.940
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF789)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 11290171 | 11298473 | - | CH03.940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 94,660.79 Da | 57.66 | 74.22 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 677 | 714 | 0.043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 630 | 669 | 1.2E-4 | IPR001680 |
| Pfam | PF05623 | Protein of unknown function (DUF789) | 133 | 432 | 2.4E-100 | IPR008507 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 585 | 868 | 9.16E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 883 | 7.2E-90 | IPR015943 |
| SMART | SM00320 | WD40_4 | 675 | 716 | 5.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 621 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 773 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 778 | 823 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 832 | 868 | 0.58 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 635 | 669 | 9.472486 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 525 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15030.1 | Protein of unknown function (DUF789). Encodes a Cysteine-rich peptide (CRP) family protein | 1.47E-91 |
| RefSeq | XP_039802315.1 | uncharacterized protein LOC120666517 isoform X1 [Panicum virgatum] | 1.21E-209 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 2.28E-90 | |
| TrEMBL | A0A811N3X9 | DUF789 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS13955 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology