Basic Information
Locus ID:
CH03.891
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 10901943 | 10908956 | - | CH03.891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 96,062.36 Da | 57.50 | 90.91 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 73 | 110 | 8.6E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 527 | 563 | 7.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 524 | 591 | 1.96E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 129 | 2.62E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 173 | 399 | 9.94E-12 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 319 | 780 | 3.2E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 178 | 414 | 9.3E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 525 | 567 | 1.9E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 70 | 134 | 2.8E-9 | - |
| SMART | SM00256 | fbox_2 | 77 | 116 | 3.8E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 530 | 569 | 0.0011 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 524 | 560 | 10.000863 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66310.1 | F-box/RNI-like/FBD-like domains-containing protein. | 1.46E-13 |
| RefSeq | XP_021310175.1 | F-box/LRR-repeat protein 25-like isoform X2 [Sorghum bicolor] | 1.92E-137 |
| Q9C8Y6 | FBD-associated F-box protein At1g66310 OS=Arabidopsis thaliana OX=3702 GN=At1g66310 PE=2 SV=1 | 1.45E-12 | |
| TrEMBL | A0A835B879 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_040882 PE=4 SV=1 | 5.17E-158 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology