Basic Information
Locus ID:
CH03.870
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 10680783 | 10696653 | + | CH03.870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 224,883.34 Da | 44.27 | 80.71 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 740 | 920 | 4.99745E-79 | - |
| CDD | cd14066 | STKc_IRAK | 1700 | 1966 | 1.70187E-95 | - |
| CDD | cd00303 | retropepsin_like | 526 | 607 | 1.03532E-8 | - |
| Pfam | PF00069 | Protein kinase domain | 1695 | 1963 | 1.9E-47 | IPR000719 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 758 | 919 | 4.1E-20 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 985 | 1055 | 1.9E-15 | IPR041577 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1678 | 1970 | 5.53E-83 | IPR011009 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1047 | 1158 | 2.91E-25 | IPR012337 |
| SUPERFAMILY | SSF50630 | Acid proteases | 524 | 602 | 5.91E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 700 | 1059 | 3.11E-112 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 783 | 920 | 1.6E-58 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 701 | 845 | 1.6E-58 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 930 | 1013 | 1.0E-21 | IPR043128 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1675 | 1769 | 1.1E-32 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1028 | 1200 | 4.4E-33 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 507 | 617 | 5.1E-11 | IPR021109 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1770 | 1982 | 1.7E-63 | - |
| SMART | SM00220 | serkin_6 | 1694 | 1965 | 4.6E-38 | IPR000719 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 999 | 1152 | 16.768711 | IPR001584 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1694 | 1970 | 38.873459 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1700 | 1723 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1816 | 1828 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1958 | 2014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1967 | 1986 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1371 | 1394 | - | - |
| Coils | Coil | Coil | 1185 | 1205 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42960.1 | Protein kinase superfamily protein. | 7.28E-206 |
| RefSeq | XP_004955836.1 | probable receptor-like protein kinase At2g42960 [Setaria italica] | 0 |
| Q9SJG2 | Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 GN=At2g42960 PE=3 SV=1 | 6.99E-205 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |