Basic Information
Locus ID:
CH03.782
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 9532000 | 9533726 | + | CH03.782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 54,722.37 Da | 57.14 | 87.74 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 63 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 65 | 1.06E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 27 | 64 | 4.3E-6 | - |
| SMART | SM00256 | fbox_2 | 28 | 68 | 0.0092 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 330 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034580706.1 | F-box/kelch-repeat protein At3g23880-like [Setaria viridis] | 4.19E-61 |
| TrEMBL | A0A4V6DAR1 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G082600v2 PE=4 SV=1 | 9.48E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0018400 |
| Poaceae | Echinochloa crus-galli | 11 | AH01.3501, AH06.331, AH07.270, BH01.462, BH07.1564, CH03.782 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0250430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0278890.1.CDS1 |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_006881, gene-QYE76_007068, gene-QYE76_008479 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g04410.1, LOC_Os10g21479.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K007300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106216, Pt_Chr0704471 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G019810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G701600 |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G395400.1 |