HalophFGD

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Basic Information
Locus ID: CH03.706
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
CH03 8556154 8556990 - CH03.706
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.71 30,259.62 Da 48.11 89.03 -0.05
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 27 62 1.7E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 26 85 2.75E-15 IPR036047
Gene3D G3DSA:1.20.1280.50 - 26 63 2.4E-8 -
SMART SM00256 fbox_2 27 66 3.0E-8 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 27 66 8.755626 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G40910.2 F-box and associated interaction domains-containing protein. 3.06E-7
RefSeq XP_039837159.1 uncharacterized protein LOC120697838 isoform X2 [Panicum virgatum] 1.51E-38
Swiss-Prot Q3EBI7 F-box protein At2g40910 OS=Arabidopsis thaliana OX=3702 GN=At2g40910 PE=2 SV=1 3.06E-6
TrEMBL A0A835AAG1 F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_061463 PE=4 SV=1 1.06E-62
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Anacardiaceae Pistacia vera 1 pistato.v30291420
Arecaceae Phoenix dactylifera 1 gene-LOC103701671
Brassicaceae Arabidopsis thaliana 1 AT2G41473.1
Plantaginaceae Plantago ovata 2 Pov_00037827, Pov_00038433
Poaceae Echinochloa crus-galli 48 AH01.2189, AH01.2195, AH03.3555, AH03.520, AH03.521 ...
AH03.534, AH03.621, AH03.771, AH03.772, AH03.774, AH03.778, AH04.2085, AH04.865, AH06.2538, AH07.2230, BH01.2859, BH03.614, BH03.641, BH03.687, BH03.899, BH03.903, BH04.831, BH04.832, BH04.833, BH05.3670, BH05.609, BH06.2338, BH06.2339, BH06.2340, BH07.2292, CH02.2815, CH03.1011, CH03.1012, CH03.1013, CH03.1016, CH03.4058, CH03.699, CH03.706, CH03.710, CH03.719, CH04.2492, CH04.839, CH05.708, CH06.2562, CH06.2563, CH06.2564, CH07.107, CH07.2367
Poaceae Eleusine coracana subsp. coracana 28 gene-QOZ80_2AG0108440, gene-QOZ80_2AG0132200 ...
gene-QOZ80_2AG0132210, gene-QOZ80_2BG0162070, gene-QOZ80_2BG0162080, gene-QOZ80_2BG0187660, gene-QOZ80_5AG0387550, gene-QOZ80_5AG0388340, gene-QOZ80_5AG0398950, gene-QOZ80_5BG0447660, gene-QOZ80_6AG0547090, gene-QOZ80_7AG0559540, gene-QOZ80_7AG0559690, gene-QOZ80_7AG0559710, gene-QOZ80_7AG0559930, gene-QOZ80_7AG0562450, gene-QOZ80_7AG0562470, gene-QOZ80_7AG0562480, gene-QOZ80_7BG0590880, gene-QOZ80_7BG0590920, gene-QOZ80_7BG0590940, gene-QOZ80_7BG0590980, gene-QOZ80_7BG0591120, gene-QOZ80_7BG0591160, gene-QOZ80_7BG0591210, gene-QOZ80_8AG0629740, gene-QOZ80_8BG0658620, gene-QOZ80_8BG0658660
Poaceae Hordeum vulgare 9 HORVU.MOREX.r3.3HG0234450.1, HORVU.MOREX.r3.3HG0246530.1 ...
HORVU.MOREX.r3.6HG0548950.1.CDS1, HORVU.MOREX.r3.6HG0548980.1.CDS1, HORVU.MOREX.r3.6HG0560200.1.CDS1, HORVU.MOREX.r3.6HG0567110.1, HORVU.MOREX.r3.6HG0567120.1.CDS1, HORVU.MOREX.r3.7HG0739630.1.CDS1, HORVU.MOREX.r3.7HG0739810.1.CDS1
Poaceae Lolium multiflorum 71 gene-QYE76_003164, gene-QYE76_003165, gene-QYE76_003228 ...
gene-QYE76_003229, gene-QYE76_005940, gene-QYE76_006449, gene-QYE76_007425, gene-QYE76_007426, gene-QYE76_007427, gene-QYE76_009917, gene-QYE76_009927, gene-QYE76_016247, gene-QYE76_018810, gene-QYE76_019790, gene-QYE76_019793, gene-QYE76_019795, gene-QYE76_019800, gene-QYE76_019809, gene-QYE76_019946, gene-QYE76_020019, gene-QYE76_024117, gene-QYE76_024384, gene-QYE76_026658, gene-QYE76_026823, gene-QYE76_030422, gene-QYE76_034567, gene-QYE76_036437, gene-QYE76_036439, gene-QYE76_036444, gene-QYE76_036446, gene-QYE76_036448, gene-QYE76_036449, gene-QYE76_036450, gene-QYE76_036452, gene-QYE76_036457, gene-QYE76_036458, gene-QYE76_037638, gene-QYE76_042937, gene-QYE76_046918, gene-QYE76_047312, gene-QYE76_048592, gene-QYE76_048596, gene-QYE76_049145, gene-QYE76_049286, gene-QYE76_049621, gene-QYE76_055065, gene-QYE76_055931, gene-QYE76_056377, gene-QYE76_057543, gene-QYE76_057544, gene-QYE76_059520, gene-QYE76_059840, gene-QYE76_060017, gene-QYE76_060018, gene-QYE76_060020, gene-QYE76_060365, gene-QYE76_060370, gene-QYE76_062142, gene-QYE76_062143, gene-QYE76_062144, gene-QYE76_062145, gene-QYE76_062171, gene-QYE76_062172, gene-QYE76_062173, gene-QYE76_062174, gene-QYE76_064526, gene-QYE76_067456, gene-QYE76_067457, gene-QYE76_067460, gene-QYE76_067461, gene-QYE76_069926
Poaceae Oryza coarctata 16 Oco01G012120, Oco13G003280, Oco13G003300, Oco13G003340 ...
Oco13G004400, Oco14G003120, Oco14G003130, Oco14G003580, Oco14G003600, Oco14G003610, Oco14G003630, Oco14G003650, Oco14G003680, Oco14G003720, Oco14G005030, Oco23G005920
Poaceae Oryza sativa 12 LOC_Os05g49530.1, LOC_Os07g08570.1, LOC_Os07g08850.1 ...
LOC_Os07g09710.1, LOC_Os07g09750.1, LOC_Os07g09814.2, LOC_Os07g09870.1, LOC_Os07g09880.1, LOC_Os07g09950.1, LOC_Os07g10710.1, LOC_Os07g13870.1, LOC_Os07g13890.1
Poaceae Paspalum vaginatum 14 gene-BS78_01G479600, gene-BS78_02G068700 ...
gene-BS78_02G068800, gene-BS78_02G069400, gene-BS78_02G069500, gene-BS78_02G069600, gene-BS78_02G071200, gene-BS78_02G115600, gene-BS78_02G115700, gene-BS78_03G143400, gene-BS78_04G146000, gene-BS78_05G105300, gene-BS78_05G105400, gene-BS78_10G214800
Poaceae Puccinellia tenuiflora 20 Pt_Chr0103507, Pt_Chr0103508, Pt_Chr0103509, Pt_Chr0103511 ...
Pt_Chr0202703, Pt_Chr0207151, Pt_Chr0303772, Pt_Chr0303775, Pt_Chr0303796, Pt_Chr0303804, Pt_Chr0400012, Pt_Chr0401397, Pt_Chr0401398, Pt_Chr0401399, Pt_Chr0401403, Pt_Chr0401413, Pt_Chr0401414, Pt_Chr0401416, Pt_Chr0401418, Pt_Chr0600836
Poaceae Sporobolus alterniflorus 16 Chr06G011030, Chr15G012580, Chr20G006450, Chr24G003140 ...
Chr24G003150, Chr24G003180, Chr24G003190, Chr24G003460, Chr24G004840, Chr26G001660, Chr28G002610, Chr28G002620, Chr28G002720, Chr28G004160, Chr28G005940, Chr29G006070
Poaceae Thinopyrum elongatum 14 Tel3E01G139700, Tel3E01G139900, Tel5E01G518300 ...
Tel5E01G519000, Tel5E01G519200, Tel5E01G519300, Tel5E01G828800, Tel6E01G160400, Tel6E01G163000, Tel6E01G273200, Tel6E01G295000, Tel6E01G295100, Tel7E01G754500, Tel7E01G842700
Poaceae Triticum dicoccoides 9 gene_TRIDC2AG077760, gene_TRIDC2BG075100 ...
gene_TRIDC3BG012920, gene_TRIDC3BG015590, gene_TRIDC3BG024110, gene_TRIDC5BG052180, gene_TRIDC6AG019220, gene_TRIDC6BG012510, gene_TRIDC6BG025200
Poaceae Triticum aestivum 49 TraesCS2B02G520400.1, TraesCS2D02G060700.1.cds1 ...
TraesCS2D02G492500.1, TraesCS2D02G520600.1.cds1, TraesCS2D02G556400.1.cds1, TraesCS3A02G096100.1.cds1, TraesCS3A02G135000.1, TraesCS3B02G091600.1.cds1, TraesCS3B02G111900.1.cds1, TraesCS3B02G168800.1, TraesCS3D02G079500.1.cds1, TraesCS3D02G096600.1.cds1, TraesCS3D02G151000.1, TraesCS5A02G326000.1.cds1, TraesCS5A02G326400.1.cds1, TraesCS5A02G326500.1.cds1, TraesCS5A02G326600.1.cds1, TraesCS5B02G326700.1.cds1, TraesCS5B02G326800.1.cds1, TraesCS5B02G326900.1.cds1, TraesCS5B02G327000.1.cds1, TraesCS5B02G327100.1.cds1, TraesCS5B02G534500.1.cds1, TraesCS5D02G332500.1.cds1, TraesCS5D02G332600.1.cds1, TraesCS5D02G332700.1.cds1, TraesCS5D02G332800.1.cds1, TraesCS5D02G332900.1.cds1, TraesCS5D02G333000.1.cds1, TraesCS6A02G066600.1.cds1, TraesCS6A02G140600.1, TraesCS6A02G140700.1, TraesCS6B02G089800.1.cds1, TraesCS6D02G065800.1.cds1, TraesCS6D02G066000.1.cds1, TraesCS6D02G128300.1, TraesCS6D02G130000.1, TraesCS6D02G130100.1, TraesCS7A02G492200.1, TraesCS7A02G493200.1.cds1, TraesCS7B02G397900.1.cds1, TraesCS7B02G398200.1.cds1, TraesCS7B02G399000.1.cds1, TraesCS7B02G399100.1.cds1, TraesCS7B02G399200.1.cds1, TraesCS7D02G478200.1.cds1, TraesCSU02G049800.1.cds1, TraesCSU02G076800.1.cds1, TraesCSU02G117500.1.cds1
Poaceae Zea mays 3 Zm00001eb325430_P001, Zm00001eb407470_P001 ...
Zm00001eb407480_P003
Poaceae Zoysia japonica 9 nbis-gene-26706, nbis-gene-26708, nbis-gene-26714 ...
nbis-gene-35574, nbis-gene-35576, nbis-gene-35580, nbis-gene-38811, nbis-gene-52763, nbis-gene-55664
Poaceae Zoysia macrostachya 8 Zma_g4874, Zma_g4879, Zma_g4880, Zma_g6151, Zma_g6152 ...
Zma_g6153, Zma_g6154, Zma_g6252
Solanaceae Lycium barbarum 2 gene-LOC132610451, gene-LOC132613453
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.