Basic Information
Locus ID:
CH03.632
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 7751446 | 7759928 | + | CH03.632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 128,170.19 Da | 42.26 | 92.11 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 293 | 435 | 2.57296E-16 | IPR038005 |
| CDD | cd04714 | BAH_BAHCC1 | 20 | 158 | 1.52608E-52 | - |
| Pfam | PF00931 | NB-ARC domain | 471 | 665 | 1.4E-43 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 312 | 390 | 2.2E-15 | IPR041118 |
| Pfam | PF01426 | BAH domain | 23 | 137 | 4.0E-20 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 142 | 190 | 4.1E-9 | IPR019787 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 448 | 666 | 6.53E-49 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 194 | 6.42E-18 | IPR011011 |
| SUPERFAMILY | SSF52058 | L domain-like | 725 | 1100 | 5.44E-40 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 656 | 735 | 4.0E-6 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 767 | 1114 | 1.9E-40 | IPR032675 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 134 | 6.8E-27 | IPR043151 |
| Gene3D | G3DSA:3.40.50.300 | - | 447 | 621 | 8.4E-39 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 206 | 2.5E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.5.4130 | - | 300 | 431 | 4.4E-14 | - |
| SMART | SM00249 | PHD_3 | 142 | 189 | 1.1E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 138 | 8.3E-38 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 140 | 191 | 9.1874 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 138 | 22.684362 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 143 | 188 | - | IPR019786 |
| PRINTS | PR00364 | Disease resistance protein signature | 489 | 504 | 3.3E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 568 | 582 | 3.3E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1063 | 1079 | 3.3E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 224 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 1.61E-91 |
| RefSeq | XP_004955697.1 | disease resistance protein RPM1 [Setaria italica] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 2.99E-89 | |
| TrEMBL | A0A5J9VZU2 | PHD-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_15536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology