Basic Information
Locus ID:
CH03.595
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A-K119 monoubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 7415433 | 7420728 | - | CH03.595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 96,211.45 Da | 71.51 | 74.15 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 233 | 5.18E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 258 | 6.9E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 220 | 9.346889 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 95 | - | - |
| Coils | Coil | Coil | 447 | 474 | - | - |
| Coils | Coil | Coil | 380 | 414 | - | - |
| Coils | Coil | Coil | 580 | 607 | - | - |
| Coils | Coil | Coil | 527 | 554 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.3 | - | 3.8E-25 |
| RefSeq | XP_034579115.1 | plectin-like isoform X2 [Setaria viridis] | 4.11E-218 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 4.99E-24 | |
| TrEMBL | A0A368PXU5 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G058800v2 PE=4 SV=1 | 2.45E-215 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH03.595 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0589550 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000250, Chr27G008220 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3405 |