Basic Information
Locus ID:
CH03.594
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 7384596 | 7387348 | - | CH03.594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 54,400.99 Da | 58.52 | 79.79 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 124 | 7.54E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 152 | 2.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 103 | 9.405901 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| Coils | Coil | Coil | 432 | 466 | - | - |
| Coils | Coil | Coil | 300 | 331 | - | - |
| Coils | Coil | Coil | 333 | 410 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.3 | - | 6.32E-24 |
| RefSeq | XP_022680424.1 | uncharacterized protein LOC101782772 [Setaria italica] | 1.78E-184 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 7.86E-23 | |
| TrEMBL | A0A4U6VNV7 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G061500v2 PE=4 SV=1 | 4.62E-182 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.415, BH03.506, BH03.628, CH03.594 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G057100 |
| Poaceae | Zea mays | 1 | Zm00001eb301580_P002 |