Basic Information
Locus ID:
CH03.588
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 7345776 | 7349347 | - | CH03.588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 67,982.31 Da | 55.33 | 91.60 | -0.54 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 7.77E-7 |
| RefSeq | XP_034580668.1 | tripartite motif-containing protein 30A-like [Setaria viridis] | 6.04E-40 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 9.78E-6 | |
| TrEMBL | A0A5J9W211 | TACC_C domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_15465 PE=4 SV=1 | 1.97E-81 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.413, BH03.502, CH03.588 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G056800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr28G002050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4822 |