Basic Information
Locus ID:
CH03.552
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein FAR1-RELATED SEQUENCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 6905316 | 6908396 | + | CH03.552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 84,726.93 Da | 43.97 | 73.83 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 320 | 413 | 2.1E-20 | IPR018289 |
| Pfam | PF04434 | SWIM zinc finger | 617 | 639 | 2.0E-4 | IPR007527 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 114 | 192 | 5.3E-13 | IPR004330 |
| SMART | SM00575 | 26again6 | 615 | 642 | 1.2E-4 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 604 | 640 | 9.779547 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| Coils | Coil | Coil | 706 | 726 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 3.44E-63 |
| RefSeq | XP_039793601.1 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Panicum virgatum] | 0 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 3.37E-62 | |
| TrEMBL | A0A2T7ELG9 | Protein FAR1-RELATED SEQUENCE OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G045900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology