Basic Information
Locus ID:
CH03.533
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 6701811 | 6704185 | + | CH03.533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 62,933.15 Da | 56.82 | 94.81 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 69 | 3.1E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 168 | 335 | 1.65E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 68 | 5.49E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 67 | 2.2E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 164 | 470 | 2.4E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 83 | 9.92138 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52460.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 1.11E-7 |
| RefSeq | XP_044333065.1 | FBD-associated F-box protein At5g60610-like isoform X1 [Triticum aestivum] | 6.81E-151 |
| Q9FHB5 | Putative F-box/FBD/LRR-repeat protein At5g52460 OS=Arabidopsis thaliana OX=3702 GN=EDA41 PE=4 SV=2 | 1.13E-6 | |
| TrEMBL | A0A368PW99 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G051600v2 PE=4 SV=1 | 4.38E-208 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.377, BH03.456, CH03.533 |
| Poaceae | Oryza coarctata | 2 | Oco13G009720, Oco14G010320 |
| Poaceae | Oryza sativa | 3 | LOC_Os07g36790.1, LOC_Os07g36890.1, LOC_Os07g36900.1 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048940, gene_TRIDC2BG051540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327500.1, TraesCS2B02G354500.1 ... |