Basic Information
Locus ID:
CH03.4826
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 56624013 | 56632269 | + | CH03.4826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 198,674.55 Da | 53.19 | 84.91 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1406 | 1833 | 9.6339E-121 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1453 | 1838 | 2.3E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 132 | 603 | 5.76E-37 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1398 | 1831 | 1.83E-94 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1346 | 1600 | 1.3E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1711 | 1836 | 5.3E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 121 | 608 | 4.0E-52 | IPR011989 |
| SMART | SM00185 | arm_5 | 164 | 212 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 254 | 294 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 297 | 335 | 17.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1420 | 1838 | 2.8E-81 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1446 | 1838 | 54.707771 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1022 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 962 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1217 | 1237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_025807197.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3 [Panicum hallii] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7F0L1 | HECT-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G001600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology