HalophFGD

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Basic Information
Locus ID: CH03.4794
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Belongs to the LDH MDH superfamily
Maps and Mapping Data
Chromosome Start End Strand ID
CH03 56386945 56387349 + CH03.4794
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.52 10,879.32 Da 52.97 86.57 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF56327 LDH C-terminal domain-like 27 100 5.22E-10 IPR015955
Gene3D G3DSA:3.90.110.10 - 32 103 2.3E-10 IPR015955
MobiDBLite mobidb-lite consensus disorder prediction 1 33 - -
Gene Ontology
Biological Process:
GO:0005975 (carbohydrate metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG Pathway
KO Term:
K00016 (L-lactate dehydrogenase [EC:1.1.1.27])
Pathway:
ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko00620 (Pyruvate metabolism) map00620 (Pyruvate metabolism) ko00640 (Propanoate metabolism) map00640 (Propanoate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments)
Reaction:
R00703 ((S)-Lactate + NAD+ <=> Pyruvate + NADH + H+) R01000 (2-Hydroxybutanoic acid + NAD+ <=> 2-Oxobutanoate + NADH + H+) R03104 (3-Mercaptolactate + NAD+ <=> Mercaptopyruvate + NADH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G17260.1 Lactate/malate dehydrogenase family protein. 5.11E-12
RefSeq XP_039787823.1 L-lactate dehydrogenase A-like [Panicum virgatum] 1.11E-30
Swiss-Prot P22989 L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare OX=4513 PE=1 SV=1 1.05E-25
TrEMBL A0A8T0WKX0 L-lactate dehydrogenase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG003300 PE=3 SV=1 2.51E-29
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 28 AH02.1637, AH02.3407, AH04.1021, AH04.1940, AH06.1327 ...
AH06.1908, AH06.2307, AH08.1711, AH08.795, BH02.2325, BH04.1838, BH04.2023, BH04.2346, BH04.82, BH05.2507, BH05.3727, BH09.185, BH09.477, BH09.479, CH02.1733, CH03.4794, CH04.1028, CH04.1436, CH04.44, CH05.3459, CH06.1596, CH09.2360, CH09.521
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.