Basic Information
Locus ID:
CH03.4794
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the LDH MDH superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 56386945 | 56387349 | + | CH03.4794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 10,879.32 Da | 52.97 | 86.57 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56327 | LDH C-terminal domain-like | 27 | 100 | 5.22E-10 | IPR015955 |
| Gene3D | G3DSA:3.90.110.10 | - | 32 | 103 | 2.3E-10 | IPR015955 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00620 (Pyruvate metabolism)
map00620 (Pyruvate metabolism)
ko00640 (Propanoate metabolism)
map00640 (Propanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17260.1 | Lactate/malate dehydrogenase family protein. | 5.11E-12 |
| RefSeq | XP_039787823.1 | L-lactate dehydrogenase A-like [Panicum virgatum] | 1.11E-30 |
| P22989 | L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare OX=4513 PE=1 SV=1 | 1.05E-25 | |
| TrEMBL | A0A8T0WKX0 | L-lactate dehydrogenase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG003300 PE=3 SV=1 | 2.51E-29 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||