Basic Information
Locus ID:
CH03.4758
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 56081066 | 56082098 | - | CH03.4758 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 36,731.84 Da | 56.71 | 86.06 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 19 | 53 | 1.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 79 | 5.23E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 53 | 4.9E-9 | - |
| SMART | SM00256 | fbox_2 | 17 | 56 | 4.9E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 283 | 3.7E-16 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 1.06E-13 |
| RefSeq | XP_034592004.1 | putative F-box protein At4g38870 [Setaria viridis] | 5.88E-115 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 1.05E-12 | |
| TrEMBL | A0A4U6WA65 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G118300v2 PE=4 SV=1 | 1.38E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology