Basic Information
Locus ID:
CH03.4557
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Sec23-binding domain of Sec16
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 54288665 | 54291198 | - | CH03.4557 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 12,566.33 Da | 31.76 | 84.38 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 109 | 5.49E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 106 | 2.4E-15 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025805146.1 | protein transport protein SEC31-like [Panicum hallii] | 2.05E-21 |
| TrEMBL | A0A0A9QBF3 | WD_REPEATS_REGION domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 1.13E-29 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06539 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.4557 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020038 |
| Poaceae | Oryza coarctata | 1 | Oco03G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03990.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19408 |