Basic Information
Locus ID:
CH03.4547
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 54215604 | 54216826 | + | CH03.4547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 42,248.76 Da | 58.17 | 86.41 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 45 | 3.5E-7 | IPR001810 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 132 | 362 | 1.33E-7 | IPR011044 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 70 | 4.19E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 65 | 1.4E-8 | - |
| SMART | SM00256 | fbox_2 | 16 | 57 | 1.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 132 | 309 | 1.7E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30930.1 | F-box family protein. | 5.65E-13 |
| RefSeq | XP_039841203.1 | F-box/LRR-repeat/kelch-repeat protein At1g09650-like [Panicum virgatum] | 7.81E-165 |
| P0C2D0 | Putative F-box protein At1g30930 OS=Arabidopsis thaliana OX=3702 GN=At1g30930 PE=4 SV=1 | 5.6E-12 | |
| TrEMBL | A0A8T0V0W2 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG479500 PE=4 SV=1 | 1.77E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology