Basic Information
Locus ID:
CH03.4504
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 53865450 | 53869193 | + | CH03.4504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 54,178.57 Da | 53.12 | 73.77 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 56 | 221 | 9.1E-25 | IPR001373 |
| Pfam | PF00888 | Cullin family | 293 | 430 | 1.6E-21 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 293 | 424 | 6.02E-24 | IPR016159 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 50 | 242 | 4.45E-27 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 287 | 407 | 1.4E-25 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 40 | 173 | 5.4E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 1.66E-30 |
| RefSeq | XP_039774606.1 | cullin-3B-like isoform X2 [Panicum virgatum] | 1.38E-63 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 1.65E-29 | |
| TrEMBL | A0A8T0XK62 | Cullin domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG058900 PE=3 SV=1 | 4.3E-62 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH07.316, AH07.318, AH07.319, BH07.413, CH03.4503, CH03.4504 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046640, gene-QYE76_046668 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55000.1 |