Basic Information
Locus ID:
CH03.4491
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 53706087 | 53715824 | + | CH03.4491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 148,248.95 Da | 50.37 | 73.15 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 593 | 795 | 2.48267E-100 | - |
| CDD | cd18794 | SF2_C_RecQ | 796 | 928 | 3.68525E-73 | - |
| Pfam | PF16124 | RecQ zinc-binding | 930 | 1002 | 4.0E-16 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 816 | 918 | 3.0E-17 | IPR001650 |
| Pfam | PF09382 | RQC domain | 1009 | 1126 | 1.0E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 607 | 775 | 7.3E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 582 | 787 | 3.4E-41 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 1010 | 1146 | 4.35E-16 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 794 | 1053 | 3.07E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 1009 | 1121 | 7.0E-21 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 568 | 795 | 1.2E-92 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 796 | 1005 | 3.5E-65 | IPR027417 |
| SMART | SM00490 | helicmild6 | 838 | 919 | 6.8E-28 | IPR001650 |
| SMART | SM00487 | ultradead3 | 601 | 804 | 7.5E-31 | IPR014001 |
| SMART | SM00956 | RQC_2 | 1011 | 1123 | 5.8E-23 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 597 | 1062 | 1.1E-167 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 813 | 964 | 20.746574 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 828 | 869 | 8.900925 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 613 | 788 | 22.838675 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 727 | 736 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 338 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_025798867.1 | ATP-dependent DNA helicase Q-like 4A [Panicum hallii] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7F1P4 | DNA helicase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G030900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology