Basic Information
Locus ID:
CH03.437
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 5776143 | 5781624 | + | CH03.437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 133,023.23 Da | 42.46 | 108.55 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 364 | 564 | 5.97721E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 986 | 1198 | 2.20415E-117 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 338 | 2.5172E-70 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 669 | 963 | 1.37083E-77 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 672 | 911 | 2.1E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 190 | 317 | 5.9E-11 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 382 | 516 | 1.2E-21 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1005 | 1153 | 1.7E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 668 | 969 | 4.84E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 97 | 338 | 5.23E-20 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 360 | 585 | 1.62E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 979 | 1198 | 2.11E-63 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 94 | 188 | 3.1E-6 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 189 | 345 | 1.3E-25 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 631 | 969 | 3.9E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 346 | 596 | 2.3E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 971 | 1198 | 2.8E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 391 | 564 | 5.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1014 | 1198 | 1.4E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 190 | 330 | 18.650833 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 988 | 1198 | 12.898649 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 364 | 587 | 23.182711 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 671 | 951 | 34.012245 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 489 | 503 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TE11 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_8G030300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology