Basic Information
Locus ID:
CH03.4310
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 52129632 | 52130339 | + | CH03.4310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 25,210.44 Da | 32.14 | 76.00 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 182 | 227 | 9.3E-25 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 73 | 134 | 7.3E-14 | IPR016073 |
| SUPERFAMILY | SSF54695 | POZ domain | 73 | 137 | 5.23E-12 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 152 | 227 | 4.05E-24 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 68 | 231 | 2.2E-51 | IPR011333 |
| SMART | SM00512 | skp1_3 | 71 | 180 | 2.9E-18 | IPR001232 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 6.56E-37 |
| RefSeq | XP_022680105.1 | SKP1-like protein 11 [Setaria italica] | 5.14E-79 |
| Q651E8 | SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1 | 6.36E-39 | |
| TrEMBL | A0A4U6W2S7 | SKP1-like protein OS=Setaria viridis OX=4556 GN=SEVIR_2G407900v2 PE=3 SV=1 | 3.45E-78 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.3762, BH03.4041, CH03.4310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G357300 |